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Using MCMICRO

MCMICRO can be used two ways:

  1. Nextflow (a command line interface)
    - Compatible with Mac, Linux, or Windows Subsystem for Linux
  2. Galaxy (a web-based interface)
    - Compatible with Mac, Linux, or Windows

Details for running Nextflow or Galaxy can be found on the sub-pages:
Nextflow Workflow Galaxy Workflow

For experienced developers, instructions for using Amazon Web Services, the HMS O2 Compute Cluster, and how to add a module within the advanced topics.


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