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This website contains several types of documentation

  1. Overview provides relevant background information related to multiplexed tissue imaging and MCMICRO.

  2. View a visual guide through the steps of MCMICRO, then download example data to try it yourself!

  3. The tutorial* provides a step-by-step example workflow that allows beginners to process two example sample data sets into mosaic images.

    * First time users should start here to verify that MCMICRO is working with their system

  4. Pipeline documentation section provides detailed documentation on how to use MCMICRO and how to adjust pipeline parameters.

    *View the frequently asked questions for step-by-step troubleshooting guides.

  5. Go to modules for reference information on the usage, parameters, and parameter tuning for the the various MCMICRO modules.

  6. Visit community to learn more about the cross-institutional effort that has culminated in MCMICRO, to get help, and to get involved!