This website contains several types of documentation
Overview provides relevant background information related to multiplexed tissue imaging and MCMICRO.
View a visual guide through the steps of MCMICRO, then download example data to try it yourself!
- The tutorial* provides a step-by-step example workflow that allows beginners to process two example sample data sets into mosaic images.
* First time users should start here to verify that MCMICRO is working with their system
- Pipeline documentation section provides detailed documentation on how to use MCMICRO and how to adjust pipeline parameters.
*View the frequently asked questions for step-by-step troubleshooting guides.
Go to modules for reference information on the usage, parameters, and parameter tuning for the the various MCMICRO modules.
- Visit community to learn more about the cross-institutional effort that has culminated in MCMICRO, to get help, and to get involved!